Quickstart#

footprint-tools requires Python is compatible with Python 3.6 or greater

Using pip?

footprint-tools can be installed via pip from PyPI.

Install using pip:

pip install footprint-tools

or for the lastest release:

pip install git+https://github.com/jvierstra/footprint-tools.git

Source from GitHub

git clone https://github.com/jvierstra/footprint-tools.git
cd footprint-tools
pip install .

Dependencies#

  • numpy

  • scipy

  • pandas

  • pysam

  • statsmodels

  • pwlf

  • simplejson

  • cython

  • genome_tools

  • tqdm

  • click

  • click-option-group

  • matplotlib

  • yaspin

We also highly recommend these non-Python analysis tools:

previous

footprint-tools: digital genomic footprint detection and analysis

next

Command reference