Tutorials#
CLI analysis workflows#
Detect footprints
Learn how to detect footprints de novo from a sequencing file
Emperical Bayes footprint detection
An example of how to jointly call identify footprints across 100s to 1000s of samples
Python analysis workflows#
Plotting and analysis of dispersion model
Learn how to inspect a dispersion model object using the Python API
Detecting and plotting footprints using API
An example of how to identify and plot footprints using the Python modules in a Jupyter notebook
Remote access and plotting posterior footprint probabilities
An example of how to recreate a figure from [Vierstra2020].