learn_beta

Learn the parameters of a Beta distribution

BEDGRAPH_FILE is a path to bedgraph file containg the per-nucleotide statistics generated from the ‘detect’ command.

Outputs the fit Beta-distribution parameters to <outfile>

Note: This step is required to compute posterior footprint probabilities.

learn_beta [OPTIONS] BEDGRAPH_FILE

Options

--fdr_cutoff <fdr_cutoff>

Only consider nucleotides with FDR <= this value

--exp_cutoff <exp_cutoff>

Only consider nucleotides with expected cleavages >= this value

--outfile <outfile>

Output file path

Arguments

BEDGRAPH_FILE

Required argument

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